/*
 * Copyright 2006-2018 The MZmine 2 Development Team
 * 
 * This file is part of MZmine 2.
 * 
 * MZmine 2 is free software; you can redistribute it and/or modify it under the terms of the GNU
 * General Public License as published by the Free Software Foundation; either version 2 of the
 * License, or (at your option) any later version.
 * 
 * MZmine 2 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License along with MZmine 2; if not,
 * write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
 * USA
 */

package net.sf.mzmine.modules.peaklistmethods.io.metaboanalystexport;

import java.awt.Window;

import net.sf.mzmine.main.MZmineCore;
import net.sf.mzmine.parameters.Parameter;
import net.sf.mzmine.parameters.UserParameter;
import net.sf.mzmine.parameters.impl.SimpleParameterSet;
import net.sf.mzmine.parameters.parametertypes.ComboParameter;
import net.sf.mzmine.parameters.parametertypes.filenames.FileNameParameter;
import net.sf.mzmine.parameters.parametertypes.selectors.PeakListsParameter;
import net.sf.mzmine.util.ExitCode;

public class MetaboAnalystExportParameters extends SimpleParameterSet {

  public static final PeakListsParameter peakLists = new PeakListsParameter(1);

  public static final FileNameParameter filename = new FileNameParameter("Filename",
      "Use pattern \"{}\" in the file name to substitute with feature list name. "
          + "(i.e. \"blah{}blah.csv\" would become \"blahSourcePeakListNameblah.csv\"). "
          + "If the file already exists, it will be overwritten.",
      "csv");

  public static final ComboParameter<UserParameter<?, ?>> groupParameter =
      new ComboParameter<UserParameter<?, ?>>("Grouping parameter",
          "Project parameter that will be used to obtain group information to each sample (e.g. control vs disease). Please set parameters in the Project/Set sample parameters menu.",
          new UserParameter[0]);

  public MetaboAnalystExportParameters() {
    super(new Parameter[] {peakLists, filename, groupParameter});
  }

  @Override
  public ExitCode showSetupDialog(Window parent, boolean valueCheckRequired) {

    UserParameter<?, ?> projectParams[] =
        MZmineCore.getProjectManager().getCurrentProject().getParameters();
    getParameter(MetaboAnalystExportParameters.groupParameter).setChoices(projectParams);

    return super.showSetupDialog(parent, valueCheckRequired);
  }
}
